Package index • pluto

Connecting to Pluto

Functions for providing your Pluto credentials

pluto_login(): Validate and store Pluto API token

pluto_is_logged_in(): Check for valid Pluto API token

pluto_logout(): Clear Pluto API token

Reading data frames

Functions for reading Pluto data into a data.frame

pluto_read_assay_data(): Read Pluto assay data table into a data frame

pluto_read_data(): Read Pluto sample or assay data table into a data frame

pluto_read_experiment_analyses(): Read Pluto analyses on an experiment into a data frame

pluto_read_project_experiments(): Read all experiments in a Pluto project into a data frame

pluto_read_results(): Read Pluto results data table into a data frame

pluto_read_sample_data(): Read Pluto sample data table into a data frame

Reading Seurat objects

Functions for fetching Seurat objects from Pluto

pluto_read_seurat_object(): Read Seurat object from Pluto

Downloading CSVs

Functions for saving Pluto data to a CSV file

pluto_download(): Pluto internal download handler

pluto_download_assay_data(): Download Pluto assay table

pluto_download_results(): Download Pluto results table

pluto_download_sample_data(): Download Pluto sample table

Downloading Seurat objects

Function for saving Seurat objects from Pluto

pluto_download_seurat_object(): Download Seurat object from Pluto

pluto_get_seurat_object(): Get Seurat objects from Pluto

pluto_get_cluster_annotation_sets(): Get cluster annotation sets from Pluto

add_cluster_annotations(): Add cluster annotations to Seurat object

Uploading to Pluto

Functions for pushing plots and tables back into a Pluto experiment

export_plotly_to_html(): Export a plotly figure to an HTML file

pluto_add_experiment_plot(): Add an analysis + plot to an experiment in Pluto

pluto_create_external_plot(): Create an external plot in Pluto

pluto_update_external_plot(): Update an external plot in Pluto

API interactions

Functions returning a full, JSON-like response

pluto_get_cluster_annotation_sets(): Get cluster annotation sets from Pluto

pluto_get_experiment(): Get experiment details

pluto_get_experiment_analyses(): List all analyses performed on an experiment in Pluto

pluto_get_experiment_data(): Get sample or assay data tables from Pluto

pluto_get_experiment_plots(): List all plots in an experiment in Pluto

pluto_get_experiments_all(): List all experiments available in Pluto

pluto_get_plot(): Get information about Pluto plot

pluto_get_project(): Get project details

pluto_get_project_experiments(): List all experiments in a project in Pluto

pluto_get_projects_all(): Get all projects available in Pluto

pluto_get_results(): Fetch results for a plot

pluto_get_seurat_object(): Get Seurat objects from Pluto